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Created page with "'''Home * People * Kirill Kryukov''' FILE:kirr_bicycle_helmet.jpg|border|right|thumb|116px|link=http://kirill-kryukov.com/kirr/| Kirill Kryukov <ref>[http..."
'''[[Main Page|Home]] * [[People]] * Kirill Kryukov'''
[[FILE:kirr_bicycle_helmet.jpg|border|right|thumb|116px|link=http://kirill-kryukov.com/kirr/| Kirill Kryukov <ref>[http://kirill-kryukov.com/kirr/ Kirr's homepage]</ref> ]]
'''Kirill Kryukov''',<br/>
a Russian computer scientist and [https://en.wikipedia.org/wiki/Bioinformatics bioinformaticist] at the ''Department of Molecular Life Science'', [https://en.wikipedia.org/wiki/Tokai_University#School_of_Medicine Tokai University School of Medicine], [https://en.wikipedia.org/wiki/Isehara,_Kanagawa Isehara, Kanagawa], [https://en.wikipedia.org/wiki/Japan Japan],
previously affiliated with the ''Division of Population Genetics'', [https://en.wikipedia.org/wiki/National_Institute_of_Genetics National Institute of Genetics] (NIG), [https://en.wikipedia.org/wiki/Mishima,_Shizuoka Mishima, Shizuoka].
His research covers [https://en.wikipedia.org/wiki/Human_genetics human genetics], [https://en.wikipedia.org/wiki/DNA DNA] [https://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] and in particular [https://en.wikipedia.org/wiki/Multiple_sequence_alignment multiple sequence alignment] (MSA).
He has written various tools and scripts for DNA data and [https://en.wikipedia.org/wiki/FASTA_format FASTA format] <ref>[http://kirill-kryukov.com/kirr/ Kirr's homepage]</ref>.
=Computer Chess=
Likely due to the common [[Dynamic Programming|dynamic programming]] roots of MSA and [[Retrograde Analysis|retrograde analysis]], Kirill Kryukov's professional and recreational activities intersect.
His computer chess related interests include [[Endgame Tablebases|endgame tablebases]], [https://en.wikipedia.org/wiki/Minichess Minichess], and further [[Engine Testing|engine testing]] and [[Match Statistics|match statistics]].
In 2004, Kirill [https://en.wikipedia.org/wiki/Solved_game solved] [https://en.wikipedia.org/wiki/Minichess#3%C3%973_and_3%C3%974_boards 3x3 Chess] <ref>[http://kirr.homeunix.org/chess/3x3-chess/ 3x3 Chess]</ref>, and in 2010, 3x4 Chess <ref>[http://kirr.homeunix.org/chess/3x4-chess/ 3x4 Chess]</ref>. He further maintains the [[KCEC]] [[Engine Rating Lists|engine rating list]] (''Kirr's Chess Engine Comparison'') <ref>[http://kirill-kryukov.com/chess/kcec/about.html KCEC - Kirr's Chess Engine Comparison]</ref>, and is administrator of the Russian [[Computer Chess Forums|KasparovChess computer chess forum]].
=Selected Publications=
<ref>[https://dblp.uni-trier.de/pers/hd/k/Kryukov:Kirill dblp Kirill Kryukov]</ref> <ref>[https://www.researchgate.net/scientific-contributions/2115185275_Kirill_Kryukov Kirill Kryukov's research works | Tokai University, Hiratsuka and other places - Researchgate]</ref>
==2003 ...==
* [[Kirill Kryukov]], [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2003'''). ''[https://www.researchgate.net/publication/200102126_Netview_Application_software_for_constructing_and_visually_exploring_phylogenetic_networks Netview: application software for constructing and visually exploring phylogenetic networks]''. Genome Informatics, Vol. 14
==2010 ...==
* [[Kirill Kryukov]], [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2010'''). ''MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data''. [http://www.informatik.uni-trier.de/%7Eley/db/journals/bmcbi/bmcbi11.html#KryukovS10 BMC Bioinformatics 11: 142] <ref>[http://kirill-kryukov.com/study/mishima/ MISHIMA: Multiple Sequence Alignment]</ref>
* [[Kirill Kryukov]], Kenta Sumiyama, Kazuho Ikeo, Takashi Gojobori, [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2012'''). ''[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342873/ A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses]''. [https://en.wikipedia.org/wiki/Genome_Biology_and_Evolution Genome Biology and Evolution], Vol. 4, No. 4
==2015 ...==
* [https://www.shh.mpg.de/events/10808/369480 Hideaki Kanzawa-Kiriyama], [[Kirill Kryukov]], Timothy A. Jinam, Kazuyoshi Hosomichi, Aiko Saso, Gen Suwa, Shintaroh Ueda, Minoru Yoneda, Atsushi Tajima, Ken-ichi Shinoda, Ituro Inoue, [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2016'''). ''[https://www.nature.com/articles/jhg2016110 A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan]''. [https://en.wikipedia.org/wiki/Journal_of_Human_Genetics Journal of Human Genetics], Vol. 62 <ref>[https://en.wikipedia.org/wiki/J%C5%8Dmon_people Jōmon people from Wikipedia]</ref>
* [[Kirill Kryukov]], [https://scholar.google.co.jp/citations?user=-y-07xYAAAAJ&hl=ja Tadashi Imanishi] ('''2016'''). ''[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162424 Human Contamination in Public Genome Assemblies]''. [https://en.wikipedia.org/wiki/PLOS_One PLoS ONE], Vol. 11, No. 9, e0162424
* [https://www.researchgate.net/scientific-contributions/2130653205_Satomi_Mitsuhashi Satomi Mitsuhashi], [[Kirill Kryukov]], So Nakagawa, Junko S. Takeuchi, Yoshiki Shiraishi, Koichiro Asano, [https://scholar.google.co.jp/citations?user=-y-07xYAAAAJ&hl=ja Tadashi Imanishi] ('''2017'''). ''[https://www.nature.com/articles/s41598-017-05772-5 A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer]''. [https://en.wikipedia.org/wiki/Scientific_Reports Scientific Reports], Vol. 7
* [[Kirill Kryukov]], Mahoko Takahashi Ueda, Tadashi Imanishi, So Nakagawa ('''2018'''). ''[https://www.ncbi.nlm.nih.gov/pubmed/29425804 Systematic survey of non-retroviral virus-like elements in eukaryotic genomes]''. [https://www.journals.elsevier.com/virus-research Virus Research], 2018, 2
* [https://shibaura.pure.elsevier.com/en/persons/nobuo-watanabe Nobuo Watanabe], [[Kirill Kryukov]], So Nakagawa, Junko S. Takeuchi, Meiko Takeshita, Yukiko Kirimura, Satomi Mitsuhashi, Toru Ishihara, Hiromichi Aoki, Sadaki Inokuchi, Tadashi Imanishi, Shigeaki Inoue (''2018''). ''[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202049 Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis]''. [https://en.wikipedia.org/wiki/PLOS_One PLoS ONE], Vol. 13, No. 8, e0202049
=Forum Posts=
* [http://www.talkchess.com/forum/viewtopic.php?t=50832 Counting endgame positions] by [[Kirill Kryukov]], [[CCC]], January 08, 2014 <ref>[http://kirill-kryukov.com/chess/nulp/ NULP (Number of Unique Legal Positions) in chess endgames] by [[Kirill Kryukov]]</ref>
* [http://www.talkchess.com/forum/viewtopic.php?t=51988 Abundance of castling vs en passant rights] by [[Kirill Kryukov]], [[CCC]], April 14, 2014 » [[Castling]], [[En passant]]
=External Links=
* [http://kirill-kryukov.com/kirr/ Kirr's homepage]
* [http://kirill-kryukov.com/chess/tablebases-online/ Endgame Tablebases Online]
* [http://kirill-kryukov.com/chess/nulp/ NULP (Number of Unique Legal Positions) in chess endgames] by [[Kirill Kryukov]]
* [http://kirill-kryukov.com/chess/discussion-board/viewforum.php?f=6 CCRL Discussion Board]
* [http://kirill-kryukov.com/chess/kcec/about.html KCEC - Kirr's Chess Engine Comparison]
: [http://kirill-kryukov.com/chess/kcec/thanks.html KCEC - Thanks]
* [http://www.lihua-jin.com/blog/ Kirill Kryukov - Save the Earth!]
* [http://www.mobygames.com/developer/sheet/view/developerId,194362/ Kirill Kryukov - MobyGames]
=References=
<references />
'''[[People|Up one level]]'''
[[Category:Researcher|Kryukov]]
[[FILE:kirr_bicycle_helmet.jpg|border|right|thumb|116px|link=http://kirill-kryukov.com/kirr/| Kirill Kryukov <ref>[http://kirill-kryukov.com/kirr/ Kirr's homepage]</ref> ]]
'''Kirill Kryukov''',<br/>
a Russian computer scientist and [https://en.wikipedia.org/wiki/Bioinformatics bioinformaticist] at the ''Department of Molecular Life Science'', [https://en.wikipedia.org/wiki/Tokai_University#School_of_Medicine Tokai University School of Medicine], [https://en.wikipedia.org/wiki/Isehara,_Kanagawa Isehara, Kanagawa], [https://en.wikipedia.org/wiki/Japan Japan],
previously affiliated with the ''Division of Population Genetics'', [https://en.wikipedia.org/wiki/National_Institute_of_Genetics National Institute of Genetics] (NIG), [https://en.wikipedia.org/wiki/Mishima,_Shizuoka Mishima, Shizuoka].
His research covers [https://en.wikipedia.org/wiki/Human_genetics human genetics], [https://en.wikipedia.org/wiki/DNA DNA] [https://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] and in particular [https://en.wikipedia.org/wiki/Multiple_sequence_alignment multiple sequence alignment] (MSA).
He has written various tools and scripts for DNA data and [https://en.wikipedia.org/wiki/FASTA_format FASTA format] <ref>[http://kirill-kryukov.com/kirr/ Kirr's homepage]</ref>.
=Computer Chess=
Likely due to the common [[Dynamic Programming|dynamic programming]] roots of MSA and [[Retrograde Analysis|retrograde analysis]], Kirill Kryukov's professional and recreational activities intersect.
His computer chess related interests include [[Endgame Tablebases|endgame tablebases]], [https://en.wikipedia.org/wiki/Minichess Minichess], and further [[Engine Testing|engine testing]] and [[Match Statistics|match statistics]].
In 2004, Kirill [https://en.wikipedia.org/wiki/Solved_game solved] [https://en.wikipedia.org/wiki/Minichess#3%C3%973_and_3%C3%974_boards 3x3 Chess] <ref>[http://kirr.homeunix.org/chess/3x3-chess/ 3x3 Chess]</ref>, and in 2010, 3x4 Chess <ref>[http://kirr.homeunix.org/chess/3x4-chess/ 3x4 Chess]</ref>. He further maintains the [[KCEC]] [[Engine Rating Lists|engine rating list]] (''Kirr's Chess Engine Comparison'') <ref>[http://kirill-kryukov.com/chess/kcec/about.html KCEC - Kirr's Chess Engine Comparison]</ref>, and is administrator of the Russian [[Computer Chess Forums|KasparovChess computer chess forum]].
=Selected Publications=
<ref>[https://dblp.uni-trier.de/pers/hd/k/Kryukov:Kirill dblp Kirill Kryukov]</ref> <ref>[https://www.researchgate.net/scientific-contributions/2115185275_Kirill_Kryukov Kirill Kryukov's research works | Tokai University, Hiratsuka and other places - Researchgate]</ref>
==2003 ...==
* [[Kirill Kryukov]], [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2003'''). ''[https://www.researchgate.net/publication/200102126_Netview_Application_software_for_constructing_and_visually_exploring_phylogenetic_networks Netview: application software for constructing and visually exploring phylogenetic networks]''. Genome Informatics, Vol. 14
==2010 ...==
* [[Kirill Kryukov]], [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2010'''). ''MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data''. [http://www.informatik.uni-trier.de/%7Eley/db/journals/bmcbi/bmcbi11.html#KryukovS10 BMC Bioinformatics 11: 142] <ref>[http://kirill-kryukov.com/study/mishima/ MISHIMA: Multiple Sequence Alignment]</ref>
* [[Kirill Kryukov]], Kenta Sumiyama, Kazuho Ikeo, Takashi Gojobori, [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2012'''). ''[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342873/ A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses]''. [https://en.wikipedia.org/wiki/Genome_Biology_and_Evolution Genome Biology and Evolution], Vol. 4, No. 4
==2015 ...==
* [https://www.shh.mpg.de/events/10808/369480 Hideaki Kanzawa-Kiriyama], [[Kirill Kryukov]], Timothy A. Jinam, Kazuyoshi Hosomichi, Aiko Saso, Gen Suwa, Shintaroh Ueda, Minoru Yoneda, Atsushi Tajima, Ken-ichi Shinoda, Ituro Inoue, [https://scholar.google.com/citations?user=406xy9MAAAAJ&hl=en Naruya Saitou] ('''2016'''). ''[https://www.nature.com/articles/jhg2016110 A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan]''. [https://en.wikipedia.org/wiki/Journal_of_Human_Genetics Journal of Human Genetics], Vol. 62 <ref>[https://en.wikipedia.org/wiki/J%C5%8Dmon_people Jōmon people from Wikipedia]</ref>
* [[Kirill Kryukov]], [https://scholar.google.co.jp/citations?user=-y-07xYAAAAJ&hl=ja Tadashi Imanishi] ('''2016'''). ''[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162424 Human Contamination in Public Genome Assemblies]''. [https://en.wikipedia.org/wiki/PLOS_One PLoS ONE], Vol. 11, No. 9, e0162424
* [https://www.researchgate.net/scientific-contributions/2130653205_Satomi_Mitsuhashi Satomi Mitsuhashi], [[Kirill Kryukov]], So Nakagawa, Junko S. Takeuchi, Yoshiki Shiraishi, Koichiro Asano, [https://scholar.google.co.jp/citations?user=-y-07xYAAAAJ&hl=ja Tadashi Imanishi] ('''2017'''). ''[https://www.nature.com/articles/s41598-017-05772-5 A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer]''. [https://en.wikipedia.org/wiki/Scientific_Reports Scientific Reports], Vol. 7
* [[Kirill Kryukov]], Mahoko Takahashi Ueda, Tadashi Imanishi, So Nakagawa ('''2018'''). ''[https://www.ncbi.nlm.nih.gov/pubmed/29425804 Systematic survey of non-retroviral virus-like elements in eukaryotic genomes]''. [https://www.journals.elsevier.com/virus-research Virus Research], 2018, 2
* [https://shibaura.pure.elsevier.com/en/persons/nobuo-watanabe Nobuo Watanabe], [[Kirill Kryukov]], So Nakagawa, Junko S. Takeuchi, Meiko Takeshita, Yukiko Kirimura, Satomi Mitsuhashi, Toru Ishihara, Hiromichi Aoki, Sadaki Inokuchi, Tadashi Imanishi, Shigeaki Inoue (''2018''). ''[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202049 Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis]''. [https://en.wikipedia.org/wiki/PLOS_One PLoS ONE], Vol. 13, No. 8, e0202049
=Forum Posts=
* [http://www.talkchess.com/forum/viewtopic.php?t=50832 Counting endgame positions] by [[Kirill Kryukov]], [[CCC]], January 08, 2014 <ref>[http://kirill-kryukov.com/chess/nulp/ NULP (Number of Unique Legal Positions) in chess endgames] by [[Kirill Kryukov]]</ref>
* [http://www.talkchess.com/forum/viewtopic.php?t=51988 Abundance of castling vs en passant rights] by [[Kirill Kryukov]], [[CCC]], April 14, 2014 » [[Castling]], [[En passant]]
=External Links=
* [http://kirill-kryukov.com/kirr/ Kirr's homepage]
* [http://kirill-kryukov.com/chess/tablebases-online/ Endgame Tablebases Online]
* [http://kirill-kryukov.com/chess/nulp/ NULP (Number of Unique Legal Positions) in chess endgames] by [[Kirill Kryukov]]
* [http://kirill-kryukov.com/chess/discussion-board/viewforum.php?f=6 CCRL Discussion Board]
* [http://kirill-kryukov.com/chess/kcec/about.html KCEC - Kirr's Chess Engine Comparison]
: [http://kirill-kryukov.com/chess/kcec/thanks.html KCEC - Thanks]
* [http://www.lihua-jin.com/blog/ Kirill Kryukov - Save the Earth!]
* [http://www.mobygames.com/developer/sheet/view/developerId,194362/ Kirill Kryukov - MobyGames]
=References=
<references />
'''[[People|Up one level]]'''
[[Category:Researcher|Kryukov]]
